Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs34350562 chr7:128718708 A/G 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs34381587 chr7:128666825 A/G 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs34394180 chr6:42660885 TC/T 2.89E-8 133 37.95 47.52 20.6 KM Plot
TGCT rs34403046 chr8:103084305 TA/T 0.00011 134 42.27 28.27 48.45 KM Plot
TGCT rs34403732 chr3:172486597 T/A 5.36E-5 132 42.1 46.3 47.38 KM Plot
TGCT rs34448879 chr12:129265792 C/T 2.19E-5 130 45.1 42.27 21.75 KM Plot
TGCT rs34544855 chr10:27586258 C/T 0 127 42.18 45.83 18.85 KM Plot
TGCT rs34591253 chr7:128721877 C/T 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs34628732 chr3:172479150 A/G 5.36E-5 133 42.1 41.92 47.38 KM Plot
TGCT rs34644138 chr7:128720967 A/G 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs34725944 chr7:128641653 T/C 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs34748780 chr7:128700153 A/G 1.87E-5 133 42.18 30.3 17.1 KM Plot
TGCT rs34865778 chr7:128717305 G/A 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs34871361 chr7:128671086 C/T 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs34888374 chr12:129296536 G/A 1.39E-5 134 41.33 44.28 29.53 KM Plot